Longxiang Xie#, Qiang Wang#, Xiaoyu Ma, Guo Zhao, Zhongyi Yan, Huimin Li, Wan Zhu, Zhanjie Zuo, Xiangqian Guo*. OStme: Online consensus Survival analysis web server for tumor microenvironment components of pan-cancers. Genes & Diseases. 2023.

Li X#, Sun X#, Yan Z, Zhao Z, Pang Z, Yang H, Ji X, Lei Y, Zhu Z*, Guo X*, Mu X*. New role of gramicidin A in RIG-I-like receptors-mediated IFN signalling. Immunology. 2023 Jan 22. doi: 10.1111/imm.13626. Online ahead of print. PMID: 36683251.

Zhang L#, Wang Q#, Han Y, Huang Y, Chen T, Guo X*. OSppc: A web server for online survival analysis using proteome of pan-cancers. J Proteomics. 2023 Feb 29:104810. doi: 10.1016/j.jprot.2022.104810. PMID: 36587732.

Qiang Wang, Guo Zhao, Longxiang Xie, Xixi Yu, Xuan Li, Baoping Zheng, Xiangqian Guo*. dbSCI: A manually curated database of SARS-CoV-2 inhibitors for COVID-19. BIOCELL. 2023, 47(2), 367-371. https://doi.org/10.32604/biocell.2023.025310.

Zheng H#, Yan T#, Han Y, Wang Q, Zhang G, Zhang L, Zhu W, Xie L, Guo X*. Nomograms for prognostic risk assessment in glioblastoma multiforme: applications and limitations. Clin Genet. 2022 Nov;102(5):359-368. doi: 10.1111/cge.14200. Epub 2022 Aug 1. PMID: 35882630.

Xie L, Wang L, Zhu W, Zhao J, Guo X*. Editorial: Bioinformatics tools (and web server) for cancer biomarker development, volume II. Front Genet. 2022 Oct 10;13:959159. doi: 10.3389/fgene.2022.959159. PMID: 36299589

Lv S#, An Y#, Dong H#, Xie L, Zheng H, Cheng X, Zhang L, Teng T, Wang Q, Yan Z, Guo X*. High APLN Expression Predicts Poor Prognosis for Glioma Patients. Oxidative Medicine and Cellular Longevity. 2022 Sep 22;2022:8393336. doi: 10.1155/2022/8393336. eCollection 2022. PMID: 36193059.

Saddozai UAK, Wang F, Khattak S, Akbar MU, Badar M, Khan NH, Zhang L, Zhu W, Xie L, Li Y, Ji X*, Guo X*. Define the Two Molecular Subtypes of Epithelioid Malignant Pleural Mesothelioma. Cells. 2022 Sep 19;11(18):2924. doi: 10.3390/cells11182924. PMID: 36139498.

Wang Y#, Li C#, Qi X, Yao Y, Zhang L, Zhang G, Xie L, Wang Q, Zhu W, Guo X*. A Comprehensive Prognostic Analysis of Tumor-Related Blood Group Antigens in Pan-Cancers Suggests That SEMA7A as a Novel Biomarker in Kidney Renal Clear Cell Carcinoma. International Journal of Molecular Sciences. 2022 Aug 8;23(15):8799. doi: 10.3390/ijms23158799. PMID: 35955933.

Zhang J*, Guo X*, Jin B, Zhu Q. Editorial: Tumor-associated antigens and their autoantibodies, from discovering to clinical utilization. Front Oncol. 2022 Jul 20;12:970623. doi: 10.3389/fonc.2022.970623. eCollection 2022. PMID: 35936692.

Han Y, Zhao G, Shi X, Wang Y, Wen X, Zhang L, Guo X*. The Emerging Role of Long Non-Coding RNAs in Esophageal Cancer: Functions in Tumorigenesis and Clinical Implications. Frontiers in Pharmacology. 2022 May 13;13:885075. doi: 10.3389/fphar.2022.885075.PMID: 35645836.

Xie L, Wang Q, Yan Z, Han Y, Ma X, Li H, Zhang L, Li X*, Guo X*. OSgc: A Web Portal to Assess the Performance of Prognostic Biomarkers in Gastric Cancer. Frontiers in Oncology. 2022 Mar 11;12:856988. doi: 10.3389/fonc.2022.856988. eCollection 2022. PMID: 35371973.

Yao X#, Qi X#, Wang Y, Zhang B, He T, Yan T, Zhang L, Wang Y, Zheng H, Zhang G*, Guo X*. Identification and Validation of an Annexin-Related Prognostic Signature and Therapeutic Targets for Bladder Cancer: Integrative Analysis. Biology (Basel). 2022 Feb 7;11(2):259. doi: 10.3390/biology11020259. PMID: 35205125.

Zhang G#, Wang Q#, Qi X, Yang H, Su X, Yang M, Jiang C, An Y, Zheng H, Zhang L, Zhu W, Guo J*, Guo X*. OShnscc: a novel user-friendly online survival analysis tool for head and neck squamous cell carcinoma based on RNA expression profiles and long-term survival information. J Zhejiang Univ Sci B. 2022 Mar 15;23(3):249-257. doi: 10.1631/jzus.B2100512. PMID: 35261220.

Yan Z#, Wang Q#, Zhao S, Xie L, Zhang L, Han Y, Zhang B, Li H, Guo X*. OSov: An Interactive Web Server to Evaluate Prognostic Biomarkers for Ovarian Cancer.Biology (Basel). 2021 Dec 24;11(1):23. doi: 10.3390/biology11010023.PMID: 35053021.

Li H, Chen L, Han Y, Zhang F, Wang Y, Han Y, Wang Y, Wang Q*, Guo X*. The Identification of RNA Modification Gene PUS7 as a Potential Biomarker of Ovarian Cancer. Biology. 2021 Nov 3;10(11):1130. doi: 10.3390/biology10111130. PMID: 34827123.

Chen L, Li H, Xie L, Zuo Z, Tian L*, Liu C*, Guo X*. Editorial: Big Data and Machine Learning in Cancer Genomics. Frontiers in Genetics. 2021 Sep 20;12:749584. doi: 10.3389/ fgene.2021.749584. PMID: 34616439.

Chao X#, Wang P#, Ma X#, Li Z, Xia Y, Guo Y, Ge L, Tian L, Zheng H, Du Y, Li J, Zuo Z, Xie L*, Guo X*. Comprehensive analysis of lncRNAs as biomarkers for diagnosis, prognosis, and treatment response in clear cell renal cell carcinoma. Molecular Therapy - Oncolytics. 2021 Aug 19;22:209-218. doi: 10.1016/j.omto.2021.08.003. eCollection 2021 Sep 24. PMID: 34514100.

He H#, Yang S#, Qiu N, Qiao L, Ding Y, Luo J, Li Y, Luo Z, Huang Y, Pang H, Ji S, Zhang L*, Guo X*.Sex-Specific Differences in Related Indicators of Blood Pressure in School-Age Children With Overweight and Obesity: A Cross-Sectional Study. Frontiers in Pediatrics. 2021 Aug 5;9:674504. doi: 10.3389/fped.2021.674504.PMID: 34422716.

Saddozai UAK, Wang F, Akbar MU, Zhang L, An Y, Zhu W, Xie L, Li Y*, Ji X*, Guo X*.Identification of Clinical Relevant Molecular Subtypes of Pheochromocytoma.Frontiers in Endocrinology. 2021 Jun 21;12:605797. doi: 10.3389/fendo.2021.605797. PMID: 34234737.

Zhao G#, Liu C#, Wen X, Luan G, Xie L*, Guo X*.The translational values of TRIM family in pan-cancers: from functions and mechanisms to clinics.Pharmacology & Therapeutics.2021 Apr 27:107881. doi: 10.1016/j.pharmthera.2021.107881.

Wang Q#, An Y#, Wang F, Zhang G, Zhang L, Dong H, Xin J, Li Y, Ji S, Guo X*. OSchol: an online consensus survival web server for cholangiocarcinoma prognosis analysis.HPB (Oxford).2021 Apr;23(4):545-550. doi: 10.1016/j.hpb.2020.08.011. Epub 2020 Sep 2.PMID: 32888851.

Shu J, Ma J, Ren X, Wang J, Wang Y, Zhang K, Yu H, Guo X*, Li Z*.The Abnormal Glycopatterns of Salivary Glycoproteins in Esophageal Squamous Cell Carcinoma Patients. Frontiers in Chemistry. 2021 Mar 4;9:637730. doi: 10.3389/fchem.2021.637730.

Zhang H, Chien M, Hou Y, Shomali W, Brar R, Ho C, Han P, Xu D, Zhang BM, Guo X, Tolentino L, Wu NC, Tsai AG, Jin J, Witteles WH, Chen Z, Abidi P, Jangam D, Krieger MS, Craig M, Bussel JB, Gotlib JR, Zehnder JL. Longitudinal study of 2 patients with cyclic thrombocytopenia, STAT3, and MPL mutations. Blood Adv. 2023 Jan 10;7(1):190-194. doi: 10.1182/bloodadvances. 2021006701. PMID: 35381066.

Lei J, Yan S, Guo X, Wang F, Zhang G, Kan Q*, Guo R*. Identification of Distinct Molecular Subtypes of Endometrioid Adenocarcinoma. Frontiers in Genetics. 2021 Jul 21;12:568779. doi: 10.3389/fgene.2021.568779..PMID: 34367229.

Cai T, Zhang Q, Wu B, Wang J, Li N, Zhang T, Wang Z, Luo J, Guo X, Ding X, Xie Z, Niu L, Ning W, Fan Z, Chen X, Guo X, Chen R, Zhang H, Yang F.LncRNA-encoded microproteins: A new form of cargo in cell culture-derived and circulating extracellular vesicles. Journal of Extracellular Vesicles. 2021 Jul;10(9):e12123. doi: 10.1002/jev2.12123. Epub 2021 Jul 12.PMID: 34276900.

Qiu N, He H, Qiao L, Ding Y, Ji S, Guo X, Luo J, Luo Z, Li Y, Pang H, Huang Y, Zhang L.Sex differences in changes in BMI and blood pressure in Chinese school-aged children during the COVID-19 quarantine. International Journal of Obesity. 2021 Sep;45(9):2132-2136. doi: 10.1038/s41366-021-00871-w. Epub 2021 Jun 5. PMID: 34091592.

Xie L, Guo X. Comment on 'The expression landscape of cachexia-inducing factors in human cancers' by Freire et al. J Cachexia Sarcopenia Muscle. 2021 Apr;12(2):523-524. doi: 10.1002/jcsm.12670. Epub 2021 Jan 13.

Cheng G, Li M, Ma X, Nan F, Zhang L, Yan Z, Li H, Zhang G, Han Y, Xie L, Guo X*. Systematic Analysis of microRNA Biomarkers for Diagnosis, Prognosis, and Therapy in Patients With Clear Cell Renal Cell Carcinoma. Front Oncol. 2020 Dec 4;10:543817. doi: 10.3389/fonc.2020.

Li H, Xie L, Wang Q, Dang Y, Sun X, Zhang L, Han Y, Yan Z, Dong H, Zheng H, Li Y, Zhu W, Guo X*. OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma. Genes (Basel). 2020 Dec 19;11(12):E1523. doi: 10.3390/genes11121523.

Li H#, Xie L#, Chen L#, Zhang L, Han Y, Yan Z, Guo X*. Genomic, epigenomic, and immune subtype analysis of CTSL/B and SARS-CoV-2 receptor ACE2 in pan-cancer. Aging (Albany NY). 2020 Nov 20;12. doi: 10.18632/aging.104147.PMID: 33231569.

Xie L, Wang L, Zhu W, Zhao J, Guo X*. Editorial: Bioinformatics Tools (and Web Server) for Cancer Biomarker Development. Front Oncol. 2020 Oct 20;10:599085. doi: 10.3389/fonc.2020.599085.

An Y, Wang Q, Sun F, Zhang G, Wang F, Zhang L, Li Y, Ren W, Zhu W, Li Y, Ji S, Guo X. OSucs: An Online Prognostic Biomarker Analysis Tool for Uterine Carcinosarcoma. Genes (Basel). 2020 Sep 3;11(9):E1040. doi: 10.3390/genes11091040.

Qi Y, Jiao Y, Chen P, Kong J, Gu B, Liu K, Feng D, Zhu Y, Ruan H, Lan Z, Liu Q, Mi Y, Guo X, Wang M, Liang G, Lamont R, Wang H, Zhou F, Feng X, Gao S. Porphyromonas gingivalis promotes progression of esophageal squamous cell cancer via TGFβ-dependent Smad/YAP/TAZ signaling. PLoS Biol. 2020 Sep 4;18(9):e3000825. doi: 10.1371/journal.pbio.3000825.

Wang Q, An Y, Wang F, Zhang G, Zhang L, Dong H, Xin J, Li Y, Ji S, Guo X.  OSchol: an online consensus survival web server for cholangiocarcinoma prognosis analysis. HPB (Oxford). 2020 Sep 1:S1365-182X(20)31124-2. doi: 10.1016/j.hpb.2020.08.011.

Zhang G, An Y, Zhang L, Xie L, Guo X*. Risk factors for in-hospital mortality in patients with cancer and COVID-19. Lancet Oncol. 2020 Sep;21(9):e407. doi: 10.1016/S1470-2045(20)30390-9.

Xie L#, Cai L#, Wang F#, Zhang L, Wang Q, Guo X*.Systematic review of prognostic gene signature in gastric cancer patients. Frontiers in Bioengineering and Biotechnology. 2020 Jul 31;8:805. doi: 10.3389/fbioe.2020.00805.

Wu B, Chen X, Wang J, Qing X, Wang Z, Ding X, Xie Z, Niu L, Guo X, Cai T, Guo X, Yang F. Separation and characterization of extracellular vesicles from human plasma by asymmetrical flow field-flow fractionation. Anal Chim Acta. 2020 Aug 29;1127:234-245. doi: 10.1016/j.aca.2020.06.071. Epub 2020 Jul 11.PMID: 328001292

An Y, Wang Q, Zhang L, Sun F, Zhang G, Dong H, Li Y, Peng Y, Li H, Zhu W, Ji S, Wang Y, Guo X. OSlgg: An Online Prognostic Biomarker Analysis Tool for Low-Grade Glioma. Front Oncol. 2020 Jul 7;10:1097. doi: 10.3389/fonc.2020.01097. eCollection 2020.PMID: 32775301

Saddozai UAK, Wang F, Cheng Y, Lu Z, Akbar MU, Zhu W, Li Y, Ji X, Guo X. Gene expression profile identifies distinct molecular subtypes and potential therapeutic genes in Merkel cell carcinoma. Transl Oncol. 2020 Aug 6;13(11):100816. doi: 10.1016/j.tranon.2020.100816. Online ahead of print.PMID: 327719

An Y, Wang Q, Zhang G, Sun F, Zhang L, Li H, Li Y, Peng Y, Zhu W, Ji S, Guo X. OSlihc: An Online Prognostic Biomarker Analysis Tool for Hepatocellular Carcinoma. Front Pharmacol. 2020 Jun 10;11:875. doi: 10.3389/fphar.2020.00875. eCollection 2020.PMID: 32587519

Yan Z, Wang Q, Lu Z, Sun X, Song P, Dang Y, Xie L, Zhang L, Li Y, Zhu W, Xie T, Ma J, Zhang Y, Guo X. OSluca: An Interactive Web Server to Evaluate Prognostic Biomarkers for Lung Cancer. Front Genet. 2020 May 26;11:420. doi: 10.3389/fgene.2020.00420. eCollection 2020.PMID: 32528519

Zhang L, Wang Q, Wang L, Xie L, An Y, Zhang G, Zhu W, Li Y, Liu Z, Zhang X, Tang P, Huo X, Guo X. OSskcm: an online survival analysis webserver for skin cutaneous melanoma based on 1085 transcriptomic profiles. Cancer Cell Int. 2020 May 19;20:176. doi: 10.1186/s12935-020-01262-3. eCollection 2020.PMID: 32467670 

Lv S, Zhang G, Xie L, Yan Z, Wang Q, Li Y, Zhang L, Han Y, Li H, Du Y, Yang Y, Guo X. High TXLNA Expression Predicts Favourable Outcome for Pancreatic Adenocarcinoma Patients. Biomed Res Int. 2020 Feb 25;2020:2585862. doi: 10.1155/2020/2585862. eCollection 2020. PMID: 32185195

Wang Q, Yan Z, Ge L, Li N, Yang M, Sun X, Xie L, Zhang G, Zhu W, Wang Y, Li Y, Li X, Guo X. OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma. Front Oncol. 2020 Mar 6;10:315. doi: 10.3389/fonc.2020.00315. eCollection 2020. PMID: 32211334

Dong H, Wang Q, Li N, Lv J, Ge L, Yang M, Zhang G, An Y, Wang F, Xie L, Li Y, Zhu W, Zhang H, Zhang M, Guo X. OSgbm: An Online Consensus Survival Analysis Web Server for Glioblastoma. Front Genet. 2020 Feb 21;10:1378. doi: 10.3389/fgene.2019.01378. eCollection 2019. PMID: 32153627

Zhu W, Xie L, Han J, Guo X. The Application of Deep Learning in Cancer Prognosis Prediction. Cancers (Basel). 2020 Mar 5;12(3). pii: E603. doi: 10.3390/cancers12030603. Review. PMID: 32150991

Guo J, Gu Y, Ma X, Zhang L, Li H, Yan Z, Han Y, Xie L, Guo X. Identification of hub genes and pathways in adrenocortical carcinoma by integrated bioinformatic analysis. J Cell Mol Med. 2020 Mar 8. doi: 10.1111/jcmm.15102. [Epub ahead of print] PMID: 32147961

Xu J, Zhao S, Teng T, Abdalla AE, Zhu W, Xie L, Wang Y, Guo X. Systematic Comparison of Two Animal-to-Human Transmitted Human Coronaviruses: SARS-CoV-2 and SARS-CoV. Viruses. 2020 Feb 22;12(2). pii: E244. doi: 10.3390/v12020244. PMID: 32098422 Free Article Similar articles Select item 320396383.

Lei J, Wang Y, Guo X, Yan S, Ma D, Wang P, Li B, Du W, Guo R, Kan Q. Low preoperative serum ALB level is independently associated with poor overall survival in endometrial cancer patients. Future Oncol. 2020 Mar;16(8):307-316. doi: 10.2217/fon-2019-0732. Epub 2020 Feb 10. PMID: 32039638 Free Article

Zheng H, Zhang G, Zhang L, Wang Q, Li H, Han Y, Xie L, Yan Z, Li Y, An Y, Dong H, Zhu W, Guo X. Comprehensive Review of Web Servers and Bioinformatics Tools for Cancer Prognosis Analysis. Front Oncol. 2020 Feb 5;10:68. doi: 10.3389/fonc.2020.00068. eCollection 2020. Review. PMID: 32117725 Similar articles Select item 320984222.

Xie L, Li H, Zhang L, Ma X, Dang Y, Guo J, Liu J, Ge L, Nan F, Dong H, Yan Z, Guo X. Autophagy-related gene P4HB: a novel diagnosis and prognosis marker for kidney renal clear cell carcinoma. Aging (Albany NY). 2020 Jan 30;12. doi: 10.18632/aging.102715. [Epub ahead of print] PMID: 32003756

Dang Y, Guo Y, Ma X, Chao X, Wang F, Cai L, Yan Z, Xie L, Guo X. Systemic analysis of the expression and prognostic significance of PAKs in breast cancer. Genomics. 2020 Jan 24. pii: S0888-7543(19)30588-9. doi: 10.1016/j.ygeno.2020.01.016. [Epub ahead of print] PMID: 31987914

Dong H, Wang Q, Zhang G, et al. OSdlbcl: An online consensus survival analysis web server based on gene expression profiles of diffuse large B-cell lymphoma. Cancer Med. 2020;9:1790–1797. https://doi.org/10.1002/cam4.2829

Zhang G, Wang Q, Yang M, Yao X, Qi X, An Y, Dong H, Zhang L, Zhu W, Li Y, Guo X. OSpaad: An online tool to perform survival analysis by integrating gene expression profiling and long-term follow-up data of 1319 pancreatic carcinoma patients. Mol Carcinog. 2020 Jan 8. doi: 10.1002/mc.23154.

Yan Z, Wang Q, Sun X, Ban B, Lu Z, Dang Y, Xie L, Zhang L, Li Y, Zhu W and Guo X. OSbrca: A Web Server for Breast Cancer Prognostic Biomarker Investigation With Massive Data From Tens of Cohorts. Front Oncol, 9, 1349 2019 Dec 20 eCollection 2019. doi: 10.3389/fonc.2019.01349

Xie L, Wang Q, Nan F, Ge L, Dang Y, Sun X, Li N, Dong H, Han Y, Zhang G, Zhu W, Guo X. OSacc: Gene Expression-Based Survival Analysis Web Tool For Adrenocortical Carcinoma. Cancer Manag Res. 2019 Oct 24;11:9145-9152. doi: 10.2147/CMAR.S215586. eCollection 2019. PMID: 31749633 

Bing Z, Yao Y, Xiong J, Tian J, Guo X, Li X, Zhang J, Shi X, Zhang Y, Yang K. Novel Model for Comprehensive Assessment of Robust Prognostic Gene Signature in Ovarian Cancer Across Different Independent Datasets. Front Genet. 2019 Oct 11;10:931. doi: 10.3389/fgene.2019.00931. eCollection 2019. PMID: 31681404

Wang F, Wang Q, Li N, Ge L, Yang M, An Y, Zhang G, Dong H, Ji S, Zhu W, Guo X. OSuvm: An interactive online consensus survival tool for uveal melanoma prognosis analysis. Mol Carcinog. 2019 Oct 23. doi: 10.1002/mc.23128. PMID: 31646691

Wang Q, Zhang L, Yan Z, Xie L, An Y, Li H, Han Y, Zhang G, Dong H, Zheng H, Zhu W, Li Y, Wang Y, Guo X. OScc: an online survival analysis web server to evaluate the prognostic value of biomarkers in cervical cancer. Future Oncol. 2019 Sep 12. doi: 10.2217/fon-2019-0412. PMID: 31512935

Yang Y, Lv S, Wang F, An Y, Fang N, Zhang W, Zhao W, Guo X, Ji S. Toxicity and serum metabolomics investigation of Mn-doped ZnS quantum dots in mice. Int J Nanomedicine. 2019 Aug 6;14:6297-6311. doi: 10.2147/IJN.S212355. eCollection 2019. PMID: 31496687 Free PMC Article

Xie L, Wang Q, Dang Y, Ge L, Sun X, Li N, Han Y, Yan Z, Zhang L, Li Y, Zhang H, Guo X. OSkirc: a web tool for identifying prognostic biomarkers in kidney renal clear cell carcinoma. Future Oncol. 2019 Aug 1. doi: 10.2217/fon-2019-0296. PMID: 31368353

Wang Q, Wang F, Lv J, Xin J, Xie L, Zhu W, Tang Y, Li Y, Zhao X, Wang Y, Li X, Guo X. Interactive online consensus survival tool for esophageal squamous cell carcinoma prognosis analysis. Oncol Lett. 2019 Aug;18(2):1199-1206. doi: 10.3892/ol.2019.10440. Epub 2019 Jun 5. PMID: 31423180

Zhang H, Zhang BM, Guo X, Xu L, You X, West RB, Bussel JB, Zehnder JL. Blood transcriptome and clonal T cell correlates of response and nonresponse to eltrombopag therapy in a cohort of patients with chronic immune thrombocytopenia. Haematologica. 2019 Jul 11. pii: haematol.2019.226688. doi: 10.3324/haematol.2019.226688. PMID: 31296576

Zhang G, Wang Q, Yang M, Yuan Q, Dang Y, Sun X, An Y, Dong H, Xie L, Zhu W, Wang Y, Guo X. OSblca: A Web Server for Investigating Prognostic Biomarkers of Bladder Cancer Patients. Front Oncol. 2019 Jun 4;9:466. doi: 10.3389/fonc.2019.00466. eCollection 2019.

Zhu Y, Wang J, Wang F, Yan Z, Liu G, Ma Y, Zhu W, Li Y, Xie L, Bazhin AV, Guo X. Differential MicroRNA Expression Profiles as Potential Biomarkers for Pancreatic Ductal Adenocarcinoma. Biochemistry (Mosc). 2019 May;84(5):575-582. doi: 10.1134/S0006297919050122. PMID: 31234772

Wang F, Yan Z, Lv J, Xin J, Dang Y, Sun X, An Y, Qi Y, Jiang Q, Zhu W, Li Y, Li A, Guo X. Gene Expression Profiling Reveals Distinct Molecular Subtypes of Esophageal Squamous Cell Carcinoma in Asian Populations. Neoplasia. 2019 Apr 29;21(6):571-581. doi: 10.1016/j.neo.2019.03.013.

Wang Q, Xie L, Dang Y, Sun X, Xie T, Guo J, Han Y, Yan Z, Zhu W, Wang Y, Li W, Guo X. OSlms: A Web Server to Evaluate the Prognostic Value of Genes in Leiomyosarcoma. Front Oncol. 2019 Mar 29;9:190. doi: 10.3389/fonc.2019.00190. eCollection 2019. PMID: 30984618

Xie L, Dang Y, Guo J, Sun X, Xie T, Zhang L, Yan Z, Amin H, Guo X. High KRT8 Expression Independently Predicts Poor Prognosis for Lung Adenocarcinoma Patients. Genes (Basel). 2019 Jan 10;10(1). pii: E36. doi: 10.3390/genes10010036.

Fang N, Zhong N, Gu T, Wang Y, Guo X, Ji S. A quantitative method for measuring the transfection efficiency of CD19-directed chimeric antigen receptor in target cells. Adv Clin Exp Med. 2018 Dec 5. doi: 10.17219/acem/90772.

Li Y, Lv J, Wan S, Xin J, Xie T, Li T, Zhu W, Zhang G, Wang Y, Tang Y, Li A, Guo X. High Sensitive and Non-invasive ctDNAs Sequencing Facilitate Clinical Diagnosis And Clinical Guidance of Non-small Cell Lung Cancer Patient: A Time Course Study. Front Oncol. 2018 Oct 30;8:491. doi: 10.3389/fonc.2018.00491. eCollection 2018. PMID: 30425968 Free Article.

Guo X, Tang Y, Zhu W. Distinct esophageal adenocarcinoma molecular subtype has subtype-specific gene expression and mutation patterns. BMC Genomics. 2018 Oct 24;19(1):769. doi: 10.1186/s12864-018-5165-0. PMID: 30355311 Free Article.

Yang J, Li A, Li Y, Guo X, Wang M. A novel approach for drug response prediction in cancer cell lines via network representation learning. Bioinformatics. 2018 Oct 10. doi: 10.1093/bioinformatics/bty848.

Wang HJ, Zhang HL, Yao L, Cui LZ, Zhang L, Gao B, Liu W, Wu DD, Chen ML, Li X, Ji AL, Li YZ*. Serum metabolic profiling of type 2 diabetes mellitus in Chinese adults using an untargeted GC/TOFMS. Clinica Chimica Acta, 2018,477:39-47.

Li P, Gu Y, Li J, Xie L, Li X, Xie J. Mycobacterium tuberculosis Major Facilitator Superfamily Transporters. J Membr Biol. 2017 Dec;250(6):573-585.

An Y, Wang S, Li S, Zhang L, Wang D, Wang H, Zhu S, Zhu W, Li Y, Chen W, Ji S, Guo X. Distinct molecular subtypes of uterine leiomyosarcoma respond differently to chemotherapy treatment. BMC Cancer. 2017 Sep 11;17(1):639.

Li Q, Li C, Xie L, Zhang C, Feng Y, Xie J. Characterization of a putative ArsR transcriptional regulator encoded by Rv2642 from Mycobacterium tuberculosis. J Biomol Struct Dyn. 2017 Jul;35(9):2031-2039.

Fang, N., T. Gu, Y. Wang, S. Wang, F. Wang, Y. An, W. Wei, W. Zhang, X. Guo, A. Nazarali, S. Ji. Expression of PTEN-long mediated by CRISPR/Cas9 can repress U87 cell proliferation. Journal of Cellular and Molecular Medicine. 2017 Jun 19.

Peng, L., P. Wang, L. Li, C. Xu, J. Liu, X. Guo, D. He, H. Huang, Z. Cheng. Exomic and Epigenomic Analyses of Monozygotic Twins Discordant for Cryptorchidism. Twin Research and Human Genetics. 2017 Jun 13:1-6.

Li P, Xie L, Gu Y, Li J, Xie J. Roles of Multifunctional COP9 Signalosome Complex in Cell Fate and Implications for Drug Discovery. J Cell Physiol. 2017 Jun;232(6):1246-1253.

Bisphenol A Removal by Submerged Macrophytes and the Contribution of Epiphytic Microorganisms to the Removal Process Zhang G, Wang Y, Jiang J, Yang S. Bull Environ Contam Toxicol. 2017 Jun;98(6):770-775.

Wei, W., X. Ji, X. Guo, S. Ji. Regulatory role of N6-methyladenosine (m6A) methylation in RNA processing and human diseases. Journal of Cellular Biochemistry. 2017 Mar 3.

Ren S, Li Q, Xie L, Xie J. Molecular Mechanisms Underlying the Function Diversity of ArsR Family Metalloregulator. Crit Rev Eukaryot Gene Expr.2017;27(1):19-35.

Yang An, Kendra L. Furber, Shaoping Ji*, Pseudogenes regulate parental gene expression via ceRNA network, Journal of Cellular and Molecular Medicine, 2017, 21(1): 185–192

Na Fang, Tingxuan Gu, Yahui Wang, Shuzhen Wang, Fengling Wang, Yang An, Wenqiang Wei, Weijuan Zhang, Xiangqian Guo, Adil J Nazarali, Shaoping Ji*, Expression of PTEN-long mediated by CRISPR/Cas9 can repress U87 cell proliferation, Journal of Cellular and Molecular Medicine, 2017, 21(12): 3337-3346

Yang An, Haojie Wang, Jingyao Jie, Yitai Tang, Weijuan Zhang, Shaoping Ji*, Xiangqian Guo*, Identification of distinct molecular subtypes of uterine carcinosarcoma, Oncotarget, 2017, 8(9): 15878–15886

Xie L, Li J, Deng W, Yu Z, Fang W, Chen M, Liao W, Xie J, Pan W. Proteomic analysis of lysine succinylation of the human pathogen Histoplasma capsulatum. J Proteomics. 2017 Feb 10;154:109-117.

Yan S, Xu M, Duan X, Yu Z, Li Q, Xie L, Fan X, Xie J. Mycobacteriophage putative GTPase-activating protein can potentiate antibiotics. Appl Microbiol Biotechnol. 2016 Sep;100(18):8169-77.

Zeng J, Deng W, Yang W, Luo H, Duan X, Xie L, Li P, Wang R, Fu T, Abdalla AE, Xie J. Mycobacterium tuberculosis Rv1152 is a Novel GntR Family Transcriptional Regulator Involved in Intrinsic Vancomycin Resistance and is a Potential Vancomycin Adjuvant Target. Sci Rep. 2016 Jun 28;6:28002.

Wang HJ, Zhang HL, Deng PC, Liu CQ, Li DD, Jie H, Zhang H, Zhou ZG, Zhao YL*. Tissue metabolic profiling of human gastric cancer assessed by 1H NMR. BMC Cancer,2016 Jun 29;16:371

Zhang HL, Qiao L, Li XP, Wan Y, Yang L, Wang HJ*. Tissue metabolic proling of lymph node metastasis of colorectal cancer assessed by 1H NMR. Oncology Reports,2016,36:3436-3448.

Xie L, Wang G, Yu Z, Zhou M, Li Q, Huang H, Xie J. Proteome-wide Lysine Glutarylation Profiling of the Mycobacterium tuberculosis H37Rv. J Proteome Res.2016 Apr 1;15(4):1379-85.

Xie L, Fang W, Deng W, Yu Z, Li J, Chen M, Liao W, Xie J, Pan W. Global profiling of lysine acetylation in human histoplasmosis pathogen Histoplasma capsulatum. Int J Biochem Cell Biol. 2016 Apr;73:1-10.

Dalerba P.,D.Sahoo, S. Paik, X. Guo, G. Yothers, N. Song, N. Wilcox-Fogel, E. Forgó, P.S. Rajendran, S.P. Miranda, S. Hisamori, J. Hutchison, T. Kalisky, D. Qian, N. Wolmark, G.A. Fisher, M. van de Rijn, M.F. Clarke, CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer. New England Journal of Medicine, 2016.

Gao S., R. Liu, Zhao, Y., P. Wang, D.G. Ward, G. Wang, X. Guo, G. Gu, W. Niu, T. Zhang, A. Martin, Z. Guo, X. Feng, Y Qi, Y. Ma, Integrative topological analysis of mass spectrometry data reveals molecular features with clinical relevance in esophageal squamous cell carcinoma. Sci Rep., 2016.22(6):21586.

Guo, X., S. Su, G. Skogerboe, W. Li, Z. Li, S. Zhang, S. Chen, R. Chen. Differential expression of miRNAs related to caste differentiation in the honey bee, Apis mellifera. Apidologie, 2016. 47：495-508.

Luo H, Zeng J, Huang Q, Liu M, Abdalla AE, Xie L, Wang H, Xie J. Mycobacterium tuberculosis Rv1265 promotes mycobacterial intracellular survival and alters cytokine profile of the infected macrophage. J Biomol Struct Dyn. 2016;34(3):585-99.

Wang H, Xie L, Luo H, Xie J. Bacterial cytoskeleton and implications for new antibiotic targets. J Drug Target. 2016;24(5):392-8.

Fengling Wang, Adil J Nazarali, Shaoping Ji*, Circular RNAs as potential biomarkers for cancer diagnosis and therapy, Am J Cancer Res, 2016，6(6):1167-1176.

Luo H, Xie L, Zeng J, Xie J. Biosynthesis and Regulation of Bioprotective Alkaloids in the Gramineae Endophytic Fungi with Implications for Herbivores Deterrents. Curr Microbiol. 2015 Dec;71(6):719-24.

Li W, Fan X, Long Q, Xie L, Xie J. Mycobacterium tuberculosis effectors involved in host-pathogen interaction revealed by a multiple scales integrative pipeline. Infect Genet Evol. 2015 Jun;32:1-11.

Fan X, Yan J, Xie L, Zeng L, Young RF 3rd, Xie J. Genomic and proteomic features of mycobacteriophage SWU1 isolated from China soil. Gene. 2015 Apr 25;561(1):45-53.

Guo, X., V.Y. Jo, A. Mills, S. Zhu, C.H. Lee, I. Espinosa, M.R. Nucci, S. Varma, E. Forgo, T. Hastie, S. Anderson, K. Ganjoo, A.H. Beck, R. West, C. Fletcher, and M. van de Rijn, Clinically relevant molecular subtypes in leiomyosarcoma. Clin Cancer Res, 2015. 21(15): p.3501-11.

Guo, X., E. Forgo and M. van de Rijn, Molecular subtyping of leiomyosarcoma with 3' end RNA sequencing. Genomics Data, 2015. 5: 366-367.

Demicco, E.G., G.M. Boland, K.J. Brewer Savannah, K. Lusby, E.D. Young, D. Ingram, K.L. Watson, M. Bailey, X. Guo, J.L. Hornick, M. van de Rijn, W.L. Wang, K.E. Torres, D. Lev, and A.J. Lazar, Progressive Loss Of Myogenic Differentiation In Leiomyosarcoma Has Prognostic Value. Histopathology, 2015. 66(5):627-38.

Zeng J, Xie L, Luo H, Xie J. The Epigenetic Modifications of Genes Associated with Tuberculosis Susceptibility and Implications for Epi-Drugs. Crit Rev Eukaryot Gene Expr. 2015;25(4):349-62.

Wang R, Zhang Z, Xie L, Xie J. Implications of Mycobacterium Major Facilitator Superfamily for Novel Measures against Tuberculosis. Crit Rev Eukaryot Gene Expr. 2015;25(4):315-21.

Xu M, Xie L, Yu Z, Xie J. Roles of Protein N-Myristoylation and Translational Medicine Applications. Crit Rev Eukaryot Gene Expr. 2015;25(3):259-68.

Li Q, Xie L, Long Q, Mao J, Li H, Zhou M, Xie J. Proteasome Accessory Factor C (pafC) Is a novel gene Involved in Mycobacterium Intrinsic Resistance to broad-spectrum antibiotics--Fluoroquinolones. Sci Rep. 2015 Jul 3;5:11910.

Li H, Li Q, Li W, Xie L, Zhou M, Xie J. The Role of PARP-1 in Host-Pathogen Interaction and Cellular Stress Responses. Crit Rev Eukaryot Gene Expr. 2015;25(2):175-90.

Yamei Hu, Yang An, Na Fang, Yanzhang Li, Haiying Jin, Adil Nazarali*, Shaoping Ji*, The Optimization of Soluble PTEN Expression in Escherichia coli, The Open Biochemistry Journal, 2015, 9: 42-48

Xie L, Wang X, Zeng J, Zhou M, Duan X, Li Q, Zhang Z, Luo H, Pang L, Li W, Liao G, Yu X, Li Y, Huang H, Xie J. Proteome-wide lysine acetylation profiling of the human pathogen Mycobacterium tuberculosis. Int J Biochem Cell Biol. 2015 Feb;59:193-202.

Abdalla AE, Li Q, Xie L, Xie J. Biology of IL-27 and its role in the host immunity against Mycobacterium tuberculosis. Int J Biol Sci. 2015 Jan 5;11(2):168-75.

Xie L, Liu W, Li Q, Chen S, Xu M, Huang Q, Zeng J, Zhou M, Xie J. First succinyl-proteome profiling of extensively drug-resistant Mycobacterium tuberculosis revealed involvement of succinylation in cellular physiology. J Proteome Res. 2015 Jan 2;14(1):107-19.

Wang, Y., A. Marino-Enriquez, R.R. Bennett, M. Zhu, Y. Shen, G. Eilers, J.C. Lee, J. Henze, B.S. Fletcher, Z. Gu, E.A. Fox, C.R. Antonescu, C.D. Fletcher, X. Guo, C.P. Raut, G.D. Demetri, M. van de Rijn, T. Ordog, L.M. Kunkel, and J.A. Fletcher, Dystrophin is a tumor suppressor in human cancers with myogenic programs. Nat Genet, 2014. 46(6): p. 601-6.

Brunner, A.L.*, J. Li*, X. Guo, R.T. Sweeney, S. Varma, S.X. Zhu, R. Li, R. Tibshirani, and R.B. West, A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions. Genome Biol, 2014. 15(5): p. R71.

van de Rijn, M., X. Guo, R.T. Sweeney, A.H. Beck, and R.B. West, Molecular Pathological Analysis of Sarcomas Using Paraffin-Embedded Tissue: Current Limitations and Future Possibilities. Histopathology, 2014. 64(1): 163-70.

Liao G, Xie L, Li X, Cheng Z, Xie J. Unexpected extensive lysine acetylation in the trump-card antibiotic producer Streptomyces roseosporus revealed by proteome-wide profiling. J Proteomics. 2014 Jun 25;106:260-9.

Fan X, Xie L, Li W, Xie J. Prophage-like elements present in Mycobacterium genomes. BMC Genomics. 2014 Mar 27;15:243.

Xie L, Zeng J, Luo H, Pan W, Xie J. The roles of bacterial GCN5-related N-acetyltransferases. Crit Rev Eukaryot Gene Expr. 2014;24(1):77-87.

Fengling Wang#, Zhitong Bing#, Yanan Zhang, Bin Ao, Sheng Zhang, Caiyong Ye, Jinpeng He, Nan Ding, Wenling Ye, Jie Xiong, Jintu Sun, Yoshiya Furusawa, Guangming Zhou*, and Lei Yang*, Quantitative proteomic analysis for radiation- induced cell cycle suspension in 92-1 melanoma cell line, J Radiat Res, 2013, 54(4): 649–662.

Guo, X., S.X. Zhu, A.L. Brunner, M. van de Rijn, and R.B. West, Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer. Breast Cancer Res, 2013. 15(6): p. R117.

Wang HJ, Wang L, Zhang HL, Deng P, Chen J, Zhou B, Hu J, Zou J, Lu WJ, Xiang P, Wu TM, Shao XN, Li Y, Zhou ZG, Zhao YL*. ¹H NMR-based metabolic profiling of human rectal cancer tissue. Molecular Cancer,2013,12(1):12

Guo, X., S. Su, G. Skogerboe, S. Dai, W. Li, Z. Li, F. Liu, R. Ni, Y. Guo, S. Chen, S. Zhang, and R. Chen, Recipe for a Busy Bee: MicroRNAs in Honey Bee Caste Determination. PLOS ONE, 2013. 8(12): p. e81661.

Newburger, D.E., D. Kashef-Haghighi, Z. Weng, R. Salari, R.T. Sweeney, A.L. Brunner, S.X. Zhu, X. Guo, S. Varma, M.L. Troxell, R.B. West, S. Batzoglou, and A. Sidow, Genome Evolution during Progression to Breast Cancer. Genome Res, 2013. 23(7):1097-108.

Yinhua Huang#, YingRui Li#, David W. Burt#, Hualan Chen, Yong Zhang, Wubin Qian, Heebal Kim, Shangquan Gan, Yiqiang Zhao, Jianwen Li, Kang Yi, Huapeng Feng, Pengyang Zhu, Bo Li, Qiuyue Liu, Suan Fairley, Katharine E. Magor,Zhenlin Du, Xiaoxiang Hu, Laurie Goodman, Hakim Tafer, Alain Vignal, Taeheon Lee, Kyu-Won Kim, Zheya Sheng, Yang An, Steve Searle, Javier Herrero, Martien A.M. Groenen, Richard P.M.A. Crooijmans, Thomas Faraut, Qingle Cai, Robert G. Webster, Jerry R. Aldridge, Wesley C. Warren, Sebastian Bartschat, Stephanie Kehr, Manja Marz, Peter F. Stadler, Jacqueline Smith, Robert H.S. Kraus, Yaofeng Zhao, Liming Ren, Jing Fei, Mireille Morisson, Pete, Kaiser, Darren K. Griffin, Frederique Pitel, Jun Wang*, Ning Li*, The duck genome and transcriptome provide insight into an avian influenza virus reservoir species, Nature Genetics, 2013, 45(7): 776-783

Li W, He J, Xie L, Chen T, Xie J. Comparative genomic insights into the biosynthesis and regulation of mycobacterial siderophores. Cell Physiol Biochem. 2013;31(1):1-13.

Yang An, Qianqian Kang, Yaofeng Zhao, Xiaoxiang Hu*, Ning Li*, Lats2 modulates adipocyte proliferation and differentiation via Hippo signaling, PloS One, 2013, 8(8): e72042

Xie L, Li W, Xie J. Prokaryotic Nε-lysine acetylomes and implications for new antibiotics. J Cell Biochem. 2012 Dec;113(12):3601-9.

Lee, C.H., W.B. Ou, A. Marino-Enriquez, M. Zhu, M. Mayeda, Y. Wang, X. Guo, A.L. Brunner, F. Amant, C.A. French, R.B. West, J.N. McAlpine, C.B. Gilks, M.B. Yaffe, L.M. Prentice, A. McPherson, S.J. Jones, M.A. Marra, S.P. Shah, M. van de Rijn, D.G. Huntsman, P. Dal Cin, M. Debiec-Rychter, M.R. Nucci, and J.A. Fletcher, 14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma. Proc Natl Acad Sci U S A, 2012. 109(3): p. 929-34.

Brunner, A.L., A.H. Beck, B. Edris, R.T. Sweeney, S.X. Zhu, R. Li, K. Montgomery, S. Varma, T. Gilks, X. Guo, J.W. Foley, D.M. Witten, C.P. Giacomini, R.A. Flynn, J.R. Pollack, R. Tibshirani, H.Y. Chang, M. van de Rijn, and R.B. West, Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers. Genome Biol, 2012. 13(8): p. R75.

Li, M.*, S. Wen*, X. Guo, B. Bai, Z. Gong, X. Liu, Y. Wang, Y. Zhou, X. Chen, L. Liu, and R. Chen, The novel long non-coding RNA CRG regulates Drosophila locomotor behavior. Nucleic Acids Res, 2012. 40(22): p. 11714-27.

Lee, C.H., R.H. Ali, M. Rouzbahman, A. Marino-Enriquez, M. Zhu, X. Guo, A.L. Brunner, S. Chiang, S. Leung, N. Nelnyk, D.G. Huntsman, C. Blake Gilks, T.O. Nielsen, P. Dal Cin, M. van de Rijn, E. Oliva, J.A. Fletcher, and M.R. Nucci, Cyclin D1 as a diagnostic immunomarker for endometrial stromal sarcoma with YWHAE-FAM22 rearrangement. Am J Surg Pathol, 2012. 36(10): p. 1562-70.

Wan, L.C.*, F. Wang*, X. Guo, S. Lu, Z. Qiu, Y. Zhao, H. Zhang, and J. Lin, Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing. BMC Plant Biol, 2012. 12: p. 146.

Weimin Ruan, Jianyong Han, Li Pin, Suying Cao, Yang An, Bing Lim, Ning Li*, A novel strategy to derive iPS cells from pig fibroblasts, Science China Life Sciences, 2011, 54(6): 553-559

Li, D., Y. Wang, K. Zhang, Z. Jiao, X. Zhu, G. Skogerboe, X. Guo, V. Chinnusamy, L. Bi, Y. Huang, S. Dong, R. Chen, and Y. Kan, Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori. Nucleic Acids Res, 2011. 39(9): p. 3792-805.

Huang, W., X. Guo, J. Dai, and R. Chen, MicroRNA and lncRNA in Neurodegenerative Diseases. Progress in Biochemistry and Biophysics, 2010. 37(8): p. 8.

Shi, B*., X. Guo*, T. Wu*, S. Sheng, J. Wang, G. Skogerbo, X. Zhu, and R. Chen, Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites. BMC Genomics, 2009. 10: p. 92.

Tan, Y., B. Zhang, T. Wu, G. Skogerbo, X. Zhu, X. Guo, S. He, and R. Chen, Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells. BMC Mol Biol, 2009. 10: p. 12.